SHOGUN  6.1.3
CWeightedDegreePositionStringKernel Member List

This is the complete list of members for CWeightedDegreePositionStringKernel, including all inherited members.

add_example_to_single_tree(int32_t idx, float64_t weight, int32_t tree_num)CWeightedDegreePositionStringKernelprotected
add_example_to_tree(int32_t idx, float64_t weight)CWeightedDegreePositionStringKernelprotectedvirtual
add_to_normal(int32_t idx, float64_t weight)CWeightedDegreePositionStringKernelvirtual
alphabetCWeightedDegreePositionStringKernelprotected
block_computationCWeightedDegreePositionStringKernelprotected
block_weightsCWeightedDegreePositionStringKernelprotected
build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict)CSGObject
cache_kernel_row(int32_t x)CKernel
cache_multiple_kernel_rows(int32_t *key, int32_t varnum)CKernel
cache_reset()CKernel
cache_sizeCKernelprotected
CKernel()CKernel
CKernel(int32_t size)CKernel
CKernel(CFeatures *l, CFeatures *r, int32_t size)CKernel
cleanup()CWeightedDegreePositionStringKernelvirtual
cleanup_POIM2()CWeightedDegreePositionStringKernel
clear_normal()CWeightedDegreePositionStringKernelvirtual
clone()CSGObjectvirtual
clone_parameters(CSGObject *other)CSGObjectprotected
combined_kernel_weightCKernelprotected
compute(int32_t idx_a, int32_t idx_b)CWeightedDegreePositionStringKernelprotectedvirtual
compute_abs_weights(int32_t &len)CWeightedDegreePositionStringKernel
compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0)CWeightedDegreePositionStringKernelvirtual
compute_batch_helper(void *p)CWeightedDegreePositionStringKernelstatic
compute_by_subkernel(int32_t idx, float64_t *subkernel_contrib)CWeightedDegreePositionStringKernelvirtual
compute_by_tree(int32_t idx)CWeightedDegreePositionStringKernelvirtual
compute_by_tree(int32_t idx, float64_t *LevelContrib)CWeightedDegreePositionStringKernelvirtual
compute_consensus(int32_t &num_feat, int32_t num_suppvec, int32_t *IDX, float64_t *alphas)CWeightedDegreePositionStringKernel
compute_optimized(int32_t idx)CWeightedDegreePositionStringKernelvirtual
compute_POIM(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *poim_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t *distrib)CWeightedDegreePositionStringKernel
compute_POIM2(int32_t max_degree, CSVM *svm)CWeightedDegreePositionStringKernel
compute_row_start(int64_t offs, int32_t n, bool symmetric)CKernelprotected
compute_scoring(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *weights)CWeightedDegreePositionStringKernel
compute_with_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen)CWeightedDegreePositionStringKernelprotected
compute_without_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen)CWeightedDegreePositionStringKernelprotected
compute_without_mismatch_matrix(char *avec, int32_t alen, char *bvec, int32_t blen)CWeightedDegreePositionStringKernelprotected
compute_without_mismatch_position_weights(char *avec, float64_t *posweights_lhs, int32_t alen, char *bvec, float64_t *posweights_rhs, int32_t blen)CWeightedDegreePositionStringKernelprotected
create_empty_tries()CWeightedDegreePositionStringKernelprotected
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
CStringKernel(int32_t cachesize=0)CStringKernel< char >
CStringKernel(CFeatures *l, CFeatures *r)CStringKernel< char >
CWeightedDegreePositionStringKernel()CWeightedDegreePositionStringKernel
CWeightedDegreePositionStringKernel(int32_t size, int32_t degree, int32_t max_mismatch=0, int32_t mkl_stepsize=1)CWeightedDegreePositionStringKernel
CWeightedDegreePositionStringKernel(int32_t size, SGVector< float64_t > weights, int32_t degree, int32_t max_mismatch, SGVector< int32_t > shifts, int32_t mkl_stepsize=1)CWeightedDegreePositionStringKernel
CWeightedDegreePositionStringKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t degree)CWeightedDegreePositionStringKernel
deep_copy() const CSGObjectvirtual
degreeCWeightedDegreePositionStringKernelprotected
delete_optimization()CWeightedDegreePositionStringKernelvirtual
delete_position_weights()CWeightedDegreePositionStringKernel
delete_position_weights_lhs()CWeightedDegreePositionStringKernel
delete_position_weights_rhs()CWeightedDegreePositionStringKernel
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
extract_w(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *w_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas)CWeightedDegreePositionStringKernel
get(const Tag< T > &_tag) const CSGObject
get(const std::string &name) const CSGObject
get_activenum_cache()CKernel
get_cache_size()CKernel
get_combined_kernel_weight()CKernel
get_degree()CWeightedDegreePositionStringKernel
get_degree_weights(int32_t &d, int32_t &len)CWeightedDegreePositionStringKernel
get_feature_class()CStringKernel< char >virtual
get_feature_type()CStringKernel< char >virtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_is_initialized()CKernel
get_kernel_col(int32_t j)CKernelvirtual
get_kernel_diagonal(SGVector< float64_t > preallocated=SGVector< float64_t >())CKernel
get_kernel_matrix()CKernel
get_kernel_matrix()CKernel
get_kernel_matrix_helper(void *p)CKernelprotectedstatic
get_kernel_row(int32_t i)CKernelvirtual
get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false)CKernel
get_kernel_type()CWeightedDegreePositionStringKernelvirtual
get_lhs()CKernel
get_lhs_equals_rhs()CKernel
get_max_elems_cache()CKernel
get_max_mismatch()CWeightedDegreePositionStringKernel
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CWeightedDegreePositionStringKernelvirtual
get_normalizer()CKernelvirtual
get_num_subkernels()CWeightedDegreePositionStringKernelvirtual
get_num_vec_lhs()CKernelvirtual
get_num_vec_rhs()CKernelvirtual
get_optimization_type()CKernel
get_parameter_gradient(const TParameter *param, index_t index=-1)CKernelvirtual
get_parameter_gradient_diagonal(const TParameter *param, index_t index=-1)CKernelvirtual
get_parameters_observable()CSGObject
get_POIM2()CWeightedDegreePositionStringKernel
get_position_weights(int32_t &len)CWeightedDegreePositionStringKernel
get_rhs()CKernel
get_subkernel_weights(int32_t &num_weights)CWeightedDegreePositionStringKernelvirtual
CStringKernel< char >::get_subkernel_weights()CKernelvirtual
get_weights(int32_t &num_weights)CWeightedDegreePositionStringKernel
has(const std::string &name) const CSGObject
has(const Tag< T > &tag) const CSGObject
has(const std::string &name) const CSGObject
has_features()CKernelvirtual
has_property(EKernelProperty p)CKernel
init(CFeatures *l, CFeatures *r)CWeightedDegreePositionStringKernelvirtual
init_block_weights()CWeightedDegreePositionStringKernel
init_block_weights_const()CWeightedDegreePositionStringKernel
init_block_weights_cubicpoly()CWeightedDegreePositionStringKernel
init_block_weights_exp()CWeightedDegreePositionStringKernel
init_block_weights_from_wd()CWeightedDegreePositionStringKernel
init_block_weights_from_wd_external()CWeightedDegreePositionStringKernel
init_block_weights_linear()CWeightedDegreePositionStringKernel
init_block_weights_log()CWeightedDegreePositionStringKernel
init_block_weights_sqpoly()CWeightedDegreePositionStringKernel
init_normalizer()CKernelvirtual
init_optimization(int32_t p_count, int32_t *IDX, float64_t *alphas)CWeightedDegreePositionStringKernelvirtual
init_optimization(int32_t count, int32_t *IDX, float64_t *alphas, int32_t tree_num, int32_t upto_tree=-1)CWeightedDegreePositionStringKernelvirtual
init_optimization_svm(CSVM *svm)CKernel
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
is_tree_initialized()CWeightedDegreePositionStringKernel
kernel(int32_t idx_a, int32_t idx_b)CKernel
kernel_cacheCKernelprotected
kernel_cache_check(int32_t cacheidx)CKernel
kernel_cache_cleanup()CKernel
kernel_cache_init(int32_t size, bool regression_hack=false)CKernel
kernel_cache_reset_lru()CKernel
kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after)CKernel
kernel_cache_space_available()CKernel
kernel_cache_touch(int32_t cacheidx)CKernel
kernel_matrixCKernelprotected
lengthCWeightedDegreePositionStringKernelprotected
lhsCKernelprotected
lhs_equals_rhsCKernelprotected
list_kernel()CKernel
list_observable_parameters()CSGObject
load(CFile *loader)CKernel
load_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
load_serializable_post()CWeightedDegreePositionStringKernelprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_gradient_parametersCSGObject
m_hashCSGObject
m_model_selection_parametersCSGObject
m_parametersCSGObject
m_poimCWeightedDegreePositionStringKernelprotected
m_poim_distribCWeightedDegreePositionStringKernelprotected
m_poim_num_featCWeightedDegreePositionStringKernelprotected
m_poim_num_symCWeightedDegreePositionStringKernelprotected
m_poim_result_lenCWeightedDegreePositionStringKernelprotected
max_mismatchCWeightedDegreePositionStringKernelprotected
max_shiftCWeightedDegreePositionStringKernelprotected
mkl_stepsizeCWeightedDegreePositionStringKernelprotected
normalizerCKernelprotected
num_lhsCKernelprotected
num_rhsCKernelprotected
observe(const ObservedValue value)CSGObjectprotected
obtain_from_generic(CSGObject *kernel)CKernelstatic
opt_typeCKernelprotected
optimization_initializedCKernelprotected
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
poim_triesCWeightedDegreePositionStringKernelprotected
position_maskCWeightedDegreePositionStringKernelprotected
position_weightsCWeightedDegreePositionStringKernelprotected
position_weights_lenCWeightedDegreePositionStringKernelprotected
position_weights_lhsCWeightedDegreePositionStringKernelprotected
position_weights_lhs_lenCWeightedDegreePositionStringKernelprotected
position_weights_rhsCWeightedDegreePositionStringKernelprotected
position_weights_rhs_lenCWeightedDegreePositionStringKernelprotected
prepare_POIM2(SGMatrix< float64_t > distrib)CWeightedDegreePositionStringKernel
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
propertiesCKernelprotected
ref()CSGObject
ref_count()CSGObject
register_observable_param(const std::string &name, const SG_OBS_VALUE_TYPE type, const std::string &description)CSGObjectprotected
register_param(Tag< T > &_tag, const T &value)CSGObjectprotected
register_param(const std::string &name, const T &value)CSGObjectprotected
register_params()CKernelprotectedvirtual
remove_lhs()CWeightedDegreePositionStringKernelprotectedvirtual
remove_lhs_and_rhs()CKernelvirtual
remove_rhs()CKernelvirtual
resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false)CKernel
rhsCKernelprotected
row_col_wise_sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false)CKernelvirtual
row_wise_sum_squared_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true)CKernelvirtual
row_wise_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true)CKernelvirtual
save(CFile *writer)CKernel
save_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
save_serializable_post()CKernelprotectedvirtual
save_serializable_pre()CKernelprotectedvirtual
seq_lengthCWeightedDegreePositionStringKernelprotected
set(const Tag< T > &_tag, const T &value)CSGObject
set(const std::string &name, const T &value)CSGObject
set_cache_size(int32_t size)CKernel
set_combined_kernel_weight(float64_t nw)CKernel
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_is_initialized(bool p_init)CKernelprotected
set_normalizer(CKernelNormalizer *normalizer)CKernelvirtual
set_optimization_type(EOptimizationType t)CKernelvirtual
set_position_weights(SGVector< float64_t > pws)CWeightedDegreePositionStringKernelvirtual
set_position_weights_lhs(float64_t *pws, int32_t len, int32_t num)CWeightedDegreePositionStringKernel
set_position_weights_rhs(float64_t *pws, int32_t len, int32_t num)CWeightedDegreePositionStringKernel
set_property(EKernelProperty p)CKernelprotected
set_shifts(SGVector< int32_t > shifts)CWeightedDegreePositionStringKernel
set_subkernel_weights(SGVector< float64_t > w)CWeightedDegreePositionStringKernelvirtual
set_time(int32_t t)CKernel
set_wd_weights()CWeightedDegreePositionStringKernelvirtual
set_weights(SGMatrix< float64_t > new_weights)CWeightedDegreePositionStringKernel
SGObservable typedefCSGObject
SGSubject typedefCSGObject
SGSubscriber typedefCSGObject
shallow_copy() const CSGObjectvirtual
shiftCWeightedDegreePositionStringKernelprotected
shift_lenCWeightedDegreePositionStringKernelprotected
subscribe_to_parameters(ParameterObserverInterface *obs)CSGObject
sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false)CKernelvirtual
sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true)CKernelvirtual
tree_initializedCWeightedDegreePositionStringKernelprotected
triesCWeightedDegreePositionStringKernelprotected
typeCWeightedDegreePositionStringKernelprotected
unref()CSGObject
unset_generic()CSGObject
unset_property(EKernelProperty p)CKernelprotected
update_parameter_hash()CSGObjectvirtual
use_poim_triesCWeightedDegreePositionStringKernelprotected
versionCSGObject
weightsCWeightedDegreePositionStringKernelprotected
weights_bufferCWeightedDegreePositionStringKernelprotected
weights_degreeCWeightedDegreePositionStringKernelprotected
weights_lengthCWeightedDegreePositionStringKernelprotected
which_degreeCWeightedDegreePositionStringKernelprotected
~CKernel()CKernelvirtual
~CSGObject()CSGObjectvirtual
~CWeightedDegreePositionStringKernel()CWeightedDegreePositionStringKernelvirtual

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